PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G27380.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 752aa    MW: 83785.7 Da    PI: 7.3306
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G27380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.72.1e-18421221499
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        +++p +fa++++g    s  + l+++sg++W++ +   +++ +  vl++GWkeFv+ang++e+D ++F+++g s+f   v +f+ 
  ONIVA03G27380.1  42 ESMIVPSRFANNFNGH--ISEVVNLKSPSGKTWSIGV--ANSDTGeLVLRSGWKEFVDANGVQENDCLLFRYSGVSSF--DVLIFDP 122
                      45899*****888666..6779***************..5555555***************************99999..8888875 PP

2B336.58.8e-122963671584
                      -EE--HHH.HTT---..--SEEEEEETTS....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3  15 rlvlpkkfaeehggkkeesktltledesg....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                       + ++ +fa ++ g+ +  +++++e   g     +W v++  r +s++ + ++GW++F+++ngL + D+++F+l
  ONIVA03G27380.1 296 TVGVSPEFAGRYLGP-AMAREVVMERGGGggggDQWHVRFVRRESSRG-FHGTGWRRFARDNGLLAHDVCLFEL 367
                      556778888888444.45668999998778999*******65555555.6788*******************96 PP

3B346.66.3e-154174951799
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      ++p +fa++++g    s ++ l+++sg++W++ +   +++ +  vl+ GWkeFv+ ng++egD ++ +++g  s+f   v +f+ 
  ONIVA03G27380.1 417 TVPARFANNFNGH--ISEEVNLRSPSGETWSIVV--ANSDAGeLVLQPGWKEFVDGNGIEEGDCLLVRYSGVsSSF--DVLIFDP 495
                      6899***888666..6779***************..5555445***************************987877..8888875 PP

4B3376.1e-12634714585
                      -..-HHHHT..T-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   5 ltpsdvlks..grlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        +s+v +s  +++ ++ +fa ++ g ++ +  +++le  ++g +W v + +r++ ++++ ++GW++F+ +n+L + D+++F+l+
  ONIVA03G27380.1 634 IHSSHVRSSkyCIVGVSPEFAGKYlGAVE-R--EVVLERaSRGGEWHVLFVHRQNTRGFY-GAGWRQFAGDNRLVAHDVCLFELT 714
                      4445554445599999********76563.3..6999998999*******9999999986.77*******************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.83E-2328129IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-2229125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.00229123IPR003340B3 DNA binding domain
SMARTSM010199.9E-1132123IPR003340B3 DNA binding domain
CDDcd100171.87E-1840121No hitNo description
PfamPF023621.6E-1542121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.8E-14274368IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-13274367IPR015300DNA-binding pseudobarrel domain
CDDcd100178.45E-11278367No hitNo description
SMARTSM010190.0095280387IPR003340B3 DNA binding domain
PROSITE profilePS5086310.898282384IPR003340B3 DNA binding domain
PfamPF023621.3E-9296367IPR003340B3 DNA binding domain
SMARTSM010190.023412496IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-17416498IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.71E-16417501IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-14417494No hitNo description
PfamPF023626.8E-12417494IPR003340B3 DNA binding domain
PROSITE profilePS5086312.887418496IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-16624741IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-16624714IPR015300DNA-binding pseudobarrel domain
CDDcd100179.61E-12628713No hitNo description
SMARTSM010190.0048630734IPR003340B3 DNA binding domain
PROSITE profilePS5086310.221630744IPR003340B3 DNA binding domain
PfamPF023621.7E-9642714IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MGMLKIGKNC SVCKEWQEHC YWSHMADDCK HFLTYMVGDF TESMIVPSRF ANNFNGHISE  60
VVNLKSPSGK TWSIGVANSD TGELVLRSGW KEFVDANGVQ ENDCLLFRYS GVSSFDVLIF  120
DPSGCEKATP HFVENRGFGR EEKSAGAEGG GRDGDKNGHH QHQLEMTPHK NSSSPCIIEM  180
KWGRNQSRLC IIDMYAAMGI IVVTTNIGTY MHERACLAEQ DHREEKKEGD DEDEDEDKDG  240
ENRYYFCRHG GRVTEYNLSK GDKEEISRVP VPVEPGNPVL VKVIHASHLL SSRYSTVGVS  300
PEFAGRYLGP AMAREVVMER GGGGGGGDQW HVRFVRRESS RGFHGTGWRR FARDNGLLAH  360
DVCLFELRLV DGAGAGDRLR RRPRPTMAVH VLRRARTAAF ARSGKNTATG AIWPTTTVPA  420
RFANNFNGHI SEEVNLRSPS GETWSIVVAN SDAGELVLQP GWKEFVDGNG IEEGDCLLVR  480
YSGVSSSFDV LIFDPSGCEK ASPHFVGSHG FGRAENSAGA EQGGRNGRRT PPIVDGDNGH  540
RHHLEMTLHR NSCRSIPRAC KRSLFSDETE AKENDGEDED EDVVAAAEGG RYGEYYFSRH  600
GRVAEYNLRK EDREEISRVP VPVQPGNPVF VQVIHSSHVR SSKYCIVGVS PEFAGKYLGA  660
VEREVVLERA SRGGEWHVLF VHRQNTRGFY GAGWRQFAGD NRLVAHDVCL FELTMVDAAA  720
GGSGNRRRRW SRRPTMTVHV LRRVRGRFVL LR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376381DRLRRR
2377383RLRRRPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086600.0AK108660.1 Oryza sativa Japonica Group cDNA clone:002-148-F01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628568.10.0PREDICTED: B3 domain-containing protein Os03g0622200
SwissprotQ10GM30.0Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBLA0A0E0GQL70.0A0A0E0GQL7_ORYNI; Uncharacterized protein
STRINGBGIOSGA013144-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-28B3 family protein